Tag: NicheNet vs CellChat
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How to Analyze Single-Cell RNA-seq Data – Complete Beginner’s Guide Part 10: Cell-Cell Communication Analysis Using NicheNet
Introduction: Taking Cell-Cell Communication Analysis to the Next Level Picking Up Where Part 9 Left Off In Part 9 of this series, we used CellChat to map the full landscape of immune cell communication in our periodontitis dataset. CellChat answered a sweeping question: Who is talking to whom, through which signaling pathways, and how does
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- How to Analyze Single-Cell RNA-seq Data — Complete Beginner’s Guide Part 11: Copy Number Variation Analysis Using CopyKAT
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Alternative Splicing Analysis ATAC-seq BAM ChIP-seq chromatin accessibility CNV DESeq2 Differential Expression edgeR FASTQ GATK Mutect2 gene expression heatmap HOMER HPC Isoform limma MACS2 MAF miRNA miRNA-seq MSigDB Normalization peak calling RNA-seq SLURM somatic mutations Transcript VCF whole genome sequencing