Tag: multi-aligner approach
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How to Analyze RNA-seq Data for Absolute Beginners Part 16-2: Fusion Gene Detection with FusionCatcher
Introduction: Advanced Fusion Detection for Cancer Research Building on our previous exploration of fusion gene detection with STAR-Fusion (Part 16), we now delve into FusionCatcher, a specialized tool that has become the gold standard for detecting somatic fusion genes in cancer samples. While both tools excel at fusion detection, FusionCatcher offers unique capabilities that make
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Alternative Splicing Analysis ATAC-seq BAM ChIP-seq chromatin accessibility CNV DESeq2 Differential Expression edgeR FASTQ GATK Mutect2 gene expression heatmap HOMER HPC Isoform limma MACS2 MAF miRNA miRNA-seq MSigDB Normalization peak calling RNA-seq SLURM somatic mutations Transcript VCF whole genome sequencing