Tag: Transcript
-
How to Analyze RNAseq Data for Absolute Beginners Part 11: Mastering Transcript-Level Alternative Splicing Analysis
Video Tutorial From Gene-Level to Transcript-Level Analysis In our previous exploration of gene-level splicing analysis, we laid the groundwork for understanding how alternative splicing shapes gene expression. Now, we’re taking a deeper dive into the fascinating world of transcript-level analysis, where we can uncover the intricate details of how genes produce different protein variants through…
//
-
How to Analyze RNAseq Data for Absolute Beginners Part 10: Isoform Analysis
Video Tutorial If you’ve followed our previous tutorials on RNA-seq analysis, you’re already familiar with gene-level analysis. But genes are far more complex than simple on/off switches – they can produce multiple versions of RNA transcripts through fascinating processes like alternative splicing. These different versions, called isoforms, allow a single gene to create multiple protein…
//
Search
Categories
- Database (1)
- Epigenetics (6)
- Metagenomics (1)
- Scientific Programming (2)
- Transcriptomics (21)
Recent Posts
- How To Analyze ATAC-seq Data For Absolute Beginners Part 1: From FASTQ To Peaks
- How To Analyze ChIP-seq Data For Absolute Beginners Part 5: Mastering Reproducibility With IDR Analysis
- How To Analyze ChIP-seq Data For Absolute Beginners Part 4: From FASTQ To Peaks With MACS2
- How To Analyze ChIP-seq Data For Absolute Beginners Part 3: Differential Binding Analysis and Motif Discovery
Tags
Alternative Splicing Analysis batch effects ChIP-seq ComBat-seq Counts covariates adjustment CPM Data Sharing DESeq2 Differential Expression edgeR FPKM gene expression HOMER HPC Isoform limma MACS2 miRNA miRNA-seq mixed linear models Normalization peak calling Quantification Salmon TPM Transcript Virus Virus-Host Virus Gene Expression