Tag: open chromatin
-
How To Analyze ATAC-seq Data For Absolute Beginners Part 1: From FASTQ To Peaks
Introduction: Understanding ATAC-seq At the heart of molecular biology lies a fundamental question: how do cells regulate which genes are expressed and when? One powerful technique to explore this question is Assay for Transposase-Accessible Chromatin sequencing, commonly known as ATAC-seq. This tutorial introduces beginners to the fascinating world of ATAC-seq data analysis using HOMER and…
//
Search
Categories
- bulk RNA-seq (20)
- chromatin accessibility (10)
- Database (2)
- Epigenetics (10)
- HPC (2)
- Metagenomics (1)
- Scientific Programming (2)
- Transcriptomics (21)
Recent Posts
- The Complete Guide to NGS Data Types and Formats: From Raw Reads to Analysis-Ready Files
- How To Analyze CUT&RUN/Tag Data For Absolute Beginners: From FASTQ to Peaks
- How To Analyze ATAC-seq Data For Absolute Beginners Part 4: ATAC-seq and RNA-seq Integration
- How To Analyze ATAC-seq Data For Absolute Beginners Part 3: Footprinting Analysis
Tags
Adapter Trimming Alternative Splicing Analysis ATAC-seq BAM ChIP-seq chromatin accessibility Conda Environment Setting Count DESeq2 Differential Expression edgeR FASTQ gene expression Gene Expression Quantification HOMER HPC Isoform limma MACS2 miRNA miRNA-seq Normalization PCA peak calling R Reads Mapping RNAseq analysis RNAseq analysis for beginners RStudio Transcript