Tag: MSigDB
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How to Analyze RNAseq Data for Absolute Beginners Part 5: From DEGs to Pathways – Best Practices
Video Tutorial Introduction After completing the data preparation, statistical testing, and visualization steps, we’re finally ready to explore the biological significance of our RNA sequencing data. As biologists, this is the moment we’ve been waiting for – but how do we make sense of the hundreds or thousands of differentially expressed genes (DEGs) we’ve identified?…
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Recent Posts
- How To Analyze ChIP-seq Data For Absolute Beginners Part 3: Differential Binding Analysis and Motif Discovery
- How To Analyze ChIP-seq Data For Absolute Beginners Part 2: Visualizing ChIP-seq Data
- How To Analyze ChIP-seq Data For Absolute Beginners Part 1: From FASTQ To Peaks With HOMER
- HPC Data Management for NGS Analysis: Storage, Transfer, and Sharing Best Practices
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Alternative Splicing Analysis Cancer ChIP-seq Counts covariates adjustment DESeq2 Differential Expression edgeR FPKM Fusion Gene Detection gene expression GREAT HOMER HPC Isoform limma microRNA miRNA miRNA-seq Normalization protein-DNA interactions Quantification Salmon smRNA-seq TPM Transcript UMI Virus Virus-Host Virus Gene Expression