Tag: IGV
-
How To Analyze ChIP-seq Data For Absolute Beginners Part 2: Visualizing ChIP-seq Data
Introduction: Why Visualization Is Critical In ChIP-seq Analysis After processing raw ChIP-seq data and identifying protein-DNA binding sites in Part 1, visualization becomes the crucial next step that transforms abstract numerical data into interpretable biological insights. While peak calling identifies where proteins bind to DNA, visualization helps answer questions about how and why these interactions…
//
Search
Categories
- Database (1)
- Epigenetics (2)
- Metagenomics (1)
- Scientific Programming (2)
- Transcriptomics (21)
Recent Posts
- How To Analyze ChIP-seq Data For Absolute Beginners Part 2: Visualizing ChIP-seq Data
- How To Analyze ChIP-seq Data For Absolute Beginners Part 1: From FASTQ To Peaks With HOMER
- HPC Data Management for NGS Analysis: Storage, Transfer, and Sharing Best Practices
- High Performance Computing (HPC) Job Submission Systems: A Beginner’s Guide to Slurm
Tags
Alternative Splicing Analysis Cancer ChIP-seq deepTools DESeq2 Differential Expression edgeR FPKM Fusion Gene Detection gene expression HPC Isoform limma microRNA miRNA miRNA-seq Normalization peak visualization profile plot Quantification RNAseq analysis Salmon smRNA smRNA-seq TPM Transcript UMI Virus Virus-Host Virus Gene Expression