Tag: HPC
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HPC Data Management for NGS Analysis: Storage, Transfer, and Sharing Best Practices
Video Tutorial Introduction to Data Management on High-Performance Computing Systems High-Performance Computing (HPC) systems have become essential tools for Next-Generation Sequencing (NGS) data analysis. These powerful computing environments allow researchers to process and analyze massive genomic datasets that would be impossible to handle on standard desktop computers. However, working effectively with HPC systems requires understanding…
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High Performance Computing (HPC) Job Submission Systems: A Beginner’s Guide to Slurm
Video Tutorial Introduction: Understanding High Performance Computing Have you ever tried to run a program on your computer, only to find that it takes hours or even days to complete? Or perhaps you needed to analyze a huge dataset that wouldn’t even fit in your computer’s memory? These are the kinds of problems that High…
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Categories
- bulk RNA-seq (20)
- chromatin accessibility (10)
- Database (2)
- Epigenetics (10)
- HPC (2)
- Metagenomics (1)
- Scientific Programming (2)
- Transcriptomics (21)
Recent Posts
- The Complete Guide to NGS Data Types and Formats: From Raw Reads to Analysis-Ready Files
- How To Analyze CUT&RUN/Tag Data For Absolute Beginners: From FASTQ to Peaks
- How To Analyze ATAC-seq Data For Absolute Beginners Part 4: ATAC-seq and RNA-seq Integration
- How To Analyze ATAC-seq Data For Absolute Beginners Part 3: Footprinting Analysis
Tags
Adapter Trimming Alternative Splicing Analysis ATAC-seq BAM ChIP-seq chromatin accessibility Conda Environment Setting Count DESeq2 Differential Expression edgeR FASTQ gene expression Gene Expression Quantification HOMER HPC Isoform limma MACS2 miRNA miRNA-seq Normalization PCA peak calling R Reads Mapping RNAseq analysis RNAseq analysis for beginners RStudio Transcript