Tag: FusionCatcher
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How to Analyze RNA-seq Data for Absolute Beginners Part 16-2: Fusion Gene Detection with FusionCatcher
Introduction: Advanced Fusion Detection for Cancer Research Building on our previous exploration of fusion gene detection with STAR-Fusion (Part 16), we now delve into FusionCatcher, a specialized tool that has become the gold standard for detecting somatic fusion genes in cancer samples. While both tools excel at fusion detection, FusionCatcher offers unique capabilities that make
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- bulk RNA-seq (27)
- chromatin accessibility (14)
- Database (4)
- Epigenetics (14)
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- RNA-seq (10)
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- Single Cell Sequencing (10)
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Recent Posts
- How to Analyze Single-Cell RNA-seq Data – Complete Beginner’s Guide Part 7-2: Trajectory Analysis Using Slingshot
- How to Analyze Single-Cell RNA-seq Data from Patient-Derived Xenograft (PDX) Models — Complete Beginner’s Guide Part 8: Processing Human-Mouse Mixed Samples
- How to Analyze Single-Cell RNA-seq Data – Complete Beginner’s Guide Part 7: Trajectory and Pseudotime Analysis Using Monocle 3
- How to Convert BAM Files Back to FASTQ Files: A Practical Guide for NGS Analysis
Tags
Alternative Splicing Analysis ATAC-seq BAM cancer genomics ChIP-seq chromatin accessibility CNV DESeq2 Differential Expression edgeR FASTQ GATK Mutect2 gene expression heatmap HOMER HPC Isoform limma MACS2 MAF miRNA miRNA-seq MSigDB Normalization peak calling RNA-seq somatic mutations Transcript VCF whole genome sequencing