Tag: Differential Binding Analysis
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How To Analyze ChIP-seq Data For Absolute Beginners Part 3: Differential Binding Analysis and Motif Discovery
Introduction: Moving Beyond Basic Peak Calling In our previous tutorials, we walked through the fundamental process of ChIP-seq analysis, from raw sequencing reads to identifying where a protein of interest binds to DNA. While finding these binding sites (peaks) is a crucial first step, it’s often just the beginning of extracting meaningful biological insights from…
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Recent Posts
- How To Analyze ChIP-seq Data For Absolute Beginners Part 3: Differential Binding Analysis and Motif Discovery
- How To Analyze ChIP-seq Data For Absolute Beginners Part 2: Visualizing ChIP-seq Data
- How To Analyze ChIP-seq Data For Absolute Beginners Part 1: From FASTQ To Peaks With HOMER
- HPC Data Management for NGS Analysis: Storage, Transfer, and Sharing Best Practices
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Alternative Splicing Analysis Cancer ChIP-seq Counts covariates adjustment DESeq2 Differential Expression edgeR FPKM Fusion Gene Detection gene expression GREAT HOMER HPC Isoform limma microRNA miRNA miRNA-seq Normalization protein-DNA interactions Quantification Salmon smRNA-seq TPM Transcript UMI Virus Virus-Host Virus Gene Expression