Tag: Data Sharing
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HPC Data Management for NGS Analysis: Storage, Transfer, and Sharing Best Practices
Introduction to Data Management on High-Performance Computing Systems High-Performance Computing (HPC) systems have become essential tools for Next-Generation Sequencing (NGS) data analysis. These powerful computing environments allow researchers to process and analyze massive genomic datasets that would be impossible to handle on standard desktop computers. However, working effectively with HPC systems requires understanding how to…
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Adapter Trimming Alternative Splicing Analysis ATAC-seq BAM ChIP-seq chromatin accessibility Conda Environment Setting Count DESeq2 Differential Expression edgeR FASTQ gene expression Gene Expression Quantification HOMER HPC Isoform limma MACS2 miRNA miRNA-seq Normalization PCA peak calling R Reads Mapping RNAseq analysis RNAseq analysis for beginners RStudio Transcript