Tag: CIRI3 workflow
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How to Analyze Circular RNA-seq Data for Absolute Beginners Part 13-2: Advanced CircRNA Detection and Differential Expression with CIRI3
Introduction: Advancing Beyond CIRCexplorer2 with CIRI3 In Part 13 of my RNA-seq tutorial series, we explored circular RNA (circRNA) analysis using CIRCexplorer2, learning how these fascinating non-linear RNA molecules form through back-splicing and play important roles in gene regulation, disease mechanisms, and potential therapeutic applications. While CIRCexplorer2 provides an excellent introduction to circRNA analysis, the
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Recent Posts
- How to Analyze Single-Cell RNA-seq Data – Complete Beginner’s Guide Part 7-2: Trajectory Analysis Using Slingshot
- How to Analyze Single-Cell RNA-seq Data from Patient-Derived Xenograft (PDX) Models — Complete Beginner’s Guide Part 8: Processing Human-Mouse Mixed Samples
- How to Analyze Single-Cell RNA-seq Data – Complete Beginner’s Guide Part 7: Trajectory and Pseudotime Analysis Using Monocle 3
- How to Convert BAM Files Back to FASTQ Files: A Practical Guide for NGS Analysis
Tags
Alternative Splicing Analysis ATAC-seq BAM cancer genomics ChIP-seq chromatin accessibility CNV DESeq2 Differential Expression edgeR FASTQ GATK Mutect2 gene expression heatmap HOMER HPC Isoform limma MACS2 MAF miRNA miRNA-seq MSigDB Normalization peak calling RNA-seq somatic mutations Transcript VCF whole genome sequencing