Tag: BSJ FSJ quantification
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How to Analyze Circular RNA-seq Data for Absolute Beginners Part 13-2: Advanced CircRNA Detection and Differential Expression with CIRI3
Introduction: Advancing Beyond CIRCexplorer2 with CIRI3 In Part 13 of my RNA-seq tutorial series, we explored circular RNA (circRNA) analysis using CIRCexplorer2, learning how these fascinating non-linear RNA molecules form through back-splicing and play important roles in gene regulation, disease mechanisms, and potential therapeutic applications. While CIRCexplorer2 provides an excellent introduction to circRNA analysis, the
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Recent Posts
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- How to Analyze Single-Cell RNA-seq Data – Complete Beginner’s Guide Part 12: Build Gene Co-expression Networks Using hdWGCNA
- How to Analyze Single-Cell RNA-seq Data — Complete Beginner’s Guide Part 11: Copy Number Variation Analysis Using CopyKAT
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Tags
Alternative Splicing Analysis ATAC-seq BAM ChIP-seq chromatin accessibility CNV DESeq2 Differential Expression edgeR FASTQ GATK Mutect2 gene expression heatmap HOMER HPC Isoform limma MACS2 MAF miRNA miRNA-seq MSigDB Normalization peak calling RNA-seq SLURM somatic mutations Transcript VCF whole genome sequencing