Tag: BAM
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How to Analyze RNAseq Data for Absolute Beginners Part 2: From Fastq to Counts – Best Practices
Video Tutorial Introduction The most straightforward way to obtain a count table is to request it directly from your sequencing company or your institution’s sequencing core. This option may involve an additional fee. However, for those eager to learn or save money, let’s walk through the process together. Before we dive in, a quick reminder:…
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Alternative Splicing Analysis Cancer ChIP-seq deepTools DESeq2 Differential Expression edgeR FPKM Fusion Gene Detection gene expression HPC Isoform limma microRNA miRNA miRNA-seq Normalization peak visualization profile plot Quantification RNAseq analysis Salmon smRNA smRNA-seq TPM Transcript UMI Virus Virus-Host Virus Gene Expression