Tag: BAM
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How to Analyze RNAseq Data for Absolute Beginners Part 2: From Fastq to Counts – Best Practices
Video Tutorial Introduction The most straightforward way to obtain a count table is to request it directly from your sequencing company or your institution’s sequencing core. This option may involve an additional fee. However, for those eager to learn or save money, let’s walk through the process together. Before we dive in, a quick reminder:…
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Recent Posts
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- How To Analyze ChIP-seq Data For Absolute Beginners Part 3: Differential Binding Analysis and Motif Discovery
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Alternative Splicing Analysis batch effects ChIP-seq ComBat-seq Counts covariates adjustment CPM Data Sharing DESeq2 Differential Expression edgeR FPKM gene expression HOMER HPC Isoform limma MACS2 miRNA miRNA-seq mixed linear models Normalization peak calling Quantification Salmon TPM Transcript Virus Virus-Host Virus Gene Expression