Category: Scientific Programming
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HPC Data Management for NGS Analysis: Storage, Transfer, and Sharing Best Practices
Introduction to Data Management on High-Performance Computing Systems High-Performance Computing (HPC) systems have become essential tools for Next-Generation Sequencing (NGS) data analysis. These powerful computing environments allow researchers to process and analyze massive genomic datasets that would be impossible to handle on standard desktop computers. However, working effectively with HPC systems requires understanding how to…
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High Performance Computing (HPC) Job Submission Systems: A Beginner’s Guide to Slurm
Introduction: Understanding High Performance Computing Have you ever tried to run a program on your computer, only to find that it takes hours or even days to complete? Or perhaps you needed to analyze a huge dataset that wouldn’t even fit in your computer’s memory? These are the kinds of problems that High Performance Computing…
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Recent Posts
- HPC Data Management for NGS Analysis: Storage, Transfer, and Sharing Best Practices
- High Performance Computing (HPC) Job Submission Systems: A Beginner’s Guide to Slurm
- How to Analyze RNAseq Data for Absolute Beginners 21: A Comprehensive Guide to Batch Effects & Covariates Adjustment
- How to Analyze RNAseq Data for Absolute Beginners Part 20: Comparing limma, DESeq2, and edgeR in Differential Expression Analysis
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Alternative Splicing Analysis Cancer circRNA-seq circular RNA ComBat-seq CPM Data Encryption Data Sharing Data Transfer DESeq2 Differential Expression edgeR Fusion Gene Detection gene expression HPC Isoform limma microRNA miRNA miRNA-seq mixed linear models NCBI GEO Normalization Quantification SLURM small RNA smRNA smRNA-seq Transcript UMI