Category: Scientific Programming
-
HPC Data Management for NGS Analysis: Storage, Transfer, and Sharing Best Practices
Introduction to Data Management on High-Performance Computing Systems High-Performance Computing (HPC) systems have become essential tools for Next-Generation Sequencing (NGS) data analysis. These powerful computing environments allow researchers to process and analyze massive genomic datasets that would be impossible to handle on standard desktop computers. However, working effectively with HPC systems requires understanding how to…
//
-
High Performance Computing (HPC) Job Submission Systems: A Beginner’s Guide to Slurm
Introduction: Understanding High Performance Computing Have you ever tried to run a program on your computer, only to find that it takes hours or even days to complete? Or perhaps you needed to analyze a huge dataset that wouldn’t even fit in your computer’s memory? These are the kinds of problems that High Performance Computing…
//
Search
Categories
- Database (1)
- Epigenetics (6)
- Metagenomics (1)
- Scientific Programming (2)
- Transcriptomics (21)
Recent Posts
- How To Analyze ATAC-seq Data For Absolute Beginners Part 1: From FASTQ To Peaks
- How To Analyze ChIP-seq Data For Absolute Beginners Part 5: Mastering Reproducibility With IDR Analysis
- How To Analyze ChIP-seq Data For Absolute Beginners Part 4: From FASTQ To Peaks With MACS2
- How To Analyze ChIP-seq Data For Absolute Beginners Part 3: Differential Binding Analysis and Motif Discovery
Tags
Alternative Splicing Analysis batch effects ChIP-seq ComBat-seq Counts covariates adjustment CPM Data Sharing DESeq2 Differential Expression edgeR FPKM gene expression HOMER HPC Isoform limma MACS2 miRNA miRNA-seq mixed linear models Normalization peak calling Quantification Salmon TPM Transcript Virus Virus-Host Virus Gene Expression